PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000038G0840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 251aa    MW: 27663.2 Da    PI: 6.7932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000038G0840genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-2098148155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr ++ +grW+AeIrdp     + +r++lg++g ae Aa+a+++a+++++g
  PH01000038G0840  98 KKYRGVRHRP-SGRWAAEIRDPQ----QgQRVWLGTYGNAEAAARAYDQAARRIRG 148
                      59*****999.7*********94....25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.03E-2098157No hitNo description
Gene3DG3DSA:3.30.730.101.6E-3099157IPR001471AP2/ERF domain
SMARTSM003803.9E-3599162IPR001471AP2/ERF domain
PfamPF008477.7E-1399148IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2199157IPR016177DNA-binding domain
PROSITE profilePS5103223.11799156IPR001471AP2/ERF domain
PRINTSPR003676.3E-11100111IPR001471AP2/ERF domain
PRINTSPR003676.3E-11138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGDAILSDL TPDRVQRRLT VAVLWPNAFS AERKATGKRK AAASTDDEFE EEFQLFEADD  60
DEEEAPAVPS ARKAPSLAVS DVSVSSSSKP RMAGPNSKKY RGVRHRPSGR WAAEIRDPQQ  120
GQRVWLGTYG NAEAAARAYD QAARRIRGKS ARLNFPHEDC PPRRRNVPER IDLNLPVISD  180
DDMMAVDAVA EMGDEPVERT LMMKIKKLIM QGPHDEQMVS VISELMDGAN RSKNSVRSAA  240
VCGVDSRMQP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1898156160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A8e-1897156363ATERF1
2gcc_A8e-1897156363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.17e-70PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLK4ADI17e-70K4ADI1_SETIT; Uncharacterized protein
STRINGSi036647m1e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-16cytokinin response factor 4